Version: 2.3
Category: NOTE * updated incorrect examples in
miceadds::micombine.chisquare
Text: and miceadds::micombine.F (thanks to Nicholas Breitborde)
Version: 2.3
Category: NOTE * restructured Rcpp functions
Text:
Version: 2.3
Category: DATA * included/modified datasets:
Text:
Version: 2.3
Category: EXAMP * included/modified examples: micombine.F (1),
Text: micombine.chisquare (2)
Version: 2.2
Category: FIXED * fixed bug in data processing 'mice.impute.pls' and
Text: 'mice.impute.plausible.values'. Additional arguments 'envir_pos'
and 'extract_data' have been included (thanks to Peter Lenz).
Version: 2.2
Category: FIXED * fixed problems in 'mice.impute.pls' due to derived
predictor
Text: variables such as interactions due to standard deviations of zero
(thanks to Peter Lenz)
Version: 2.2
Category: NOTE * included some utility descriptiptive statistics
functions
Text: 'stats0', 'mean0', 'sd0', ...
Version: 2.2
Category: NOTE * included correct attributes in 'scale_datlist'
function for
Text: objects of class datlist (thanks to Andrew Frank-Wilson)
Version: 2.2
Category: NOTE * extended 'scale_datlist' function to handle multiple
variables to
Text: be standardized
Version: 2.2
Category: DATA * included/modified datasets:
Text:
Version: 2.2
Category: EXAMP * included/modified examples: stats0 (1), scale_datlist
(3
Text:
Version: 2.1
Category: NOTE * added utility function 'filename_split' for splitting
file names
Text:
Version: 2.1
Category: NOTE * added utility function 'files_move' for moving files
from one
Text: directory into another directory
Version: 2.1
Category: NOTE * included starting values in imputations in the
function
Text: 'mice.impute.2l.latentgroupmean.MCMC' which are obtained from
previous iterations in MCMC imputation chain
Version: 2.1
Category: DATA * included/modified datasets:
Text:
Version: 2.1
Category: EXAMP * included/modified examples: filename_split (1),
files_move (1
Text:
Version: 2.0
Category: FIXED * fixed an incorrect calculation in D2 statistic which
appeared
Text: differently in literature (thanks to David Tian)
Version: 2.0
Category: NOTE * allow now vectors of strings to specify file names in
'load.data
Text: Also included the value NULL of the argument 'path' if a path
should not be specified in this argument.
Version: 2.0
Category: ADDED * included mice imputation method 'mice.impute.hotDeck'
for
Text: probabilistic hot deck imputation
Version: 2.0
Category: FIXED * fixed a bug included in
'mice.impute.plausible.values' using
Text: likelihood objects which was recently introduced in miceadds 1.9
Version: 2.0
Category: FIXED * fixed a bug in predicted mean matching of two-level
data in
Text: function 'mice.impute.2l.pmm'
Version: 2.0
Category: DATA * included/modified datasets:
Text:
Version: 2.0
Category: EXAMP * included/modified examples: mice.impute.hotDeck (1
Text:
Version: 1.9
Category: FIXED * fixed a bug in 'mice.impute.2l.binary'. Random slopes
were
Text: not properly handled in the previuos package version (miceadds
1.8).
Version: 1.9
Category: ADDED * included lme4-based and blme-based imputation of
normally
Text: distributed two-level data in 'mice.impute.2l.continuous'
function. Predictive mean matching for two-level data is also
added as the 'mice.impute.2l.pmm' function.
Version: 1.9
Category: ADDED * included imputation function '2lonly.function' for
level 2
Text: imputation based on (arbitrary) level 1 imputation function
Version: 1.9
Category: ADDED * added general group-wise imputation function
'mice.impute.bygroup
Text:
Version: 1.9
Category: NOTE * included t values and p values in output of 'pool_mi'
for
Text: inference of multiply imputed datasets (due to a request on R
help list of Jennifer Lorenz)
Version: 1.9
Category: NOTE * renamed PLS imputation method '2l.pls' into
'mice.impute.pls
Text:
Version: 1.9
Category: NOTE * renamed plausible value imputation method into
Text: 'mice.impute.plausible.values'
Version: 1.9
Category: NOTE * renamed 'mice.impute.2l.eap' into 'mice.impute.eap
Text:
Version: 1.9
Category: NOTE * Defunct functions: 'mice.impute.2l.pls',
'mice.impute.2l.pls2
Text: 'fast.groupmean', 'fast.groupsum',
'mice.impute.2l.plausible.values', 'mice.impute.2l.eap',
'mice.impute.2lonly.norm2', 'mice.impute.2lonly.pmm2'
Version: 1.9
Category: DATA * included/modified datasets:
Text:
Version: 1.9
Category: EXAMP * included/modified examples: mice.impute.2l.lmer (1
Text: mice.impute.2lonly.function (1), mice.imputation.bygroup (1),
lm.cluster(1), mice.impute.pls (1)
Version: 1.8
Category: NOTE * added argument 'subdir' in 'write.datlist' indicating
whether
Text: output should be written in a subdirectory or directly into the
working directory
Version: 1.8
Category: NOTE * fixed a minor bug in creation of Mplus input files in
Text: 'write.mice.imputation' and 'write.datlist'
Version: 1.8
Category: NOTE * deleted display of chi square approximation p value in
Text: 'micombine.F' and 'micombine.chisquare' (after a discussion with
Joanna Kaye)
Version: 1.8
Category: NOTE * extended 'subset' methods for integer input of
argument
Text: 'subset' which allows easier selection of rows by specifying row
indices
Version: 1.8
Category: NOTE * changed dimnames handling in 'NMIwaldtest' which
should have
Text: no practical side effects
Version: 1.8
Category: ADDED * added utility functions 'ma.wtd.skewnessNA' and
Text: 'ma.wtd.curtosisNA' for calculating skewness and curtosis (due to
a correspondence with Timo Ehmke)
Version: 1.8
Category: ADDED * added the function 'ma.wtd.quantileNA' for weighted
quantile
Text: calculation
Version: 1.8
Category: NOTE * extended 'ma.wtd.statNA' functions to handle objects
of
Text: class 'BIFIEdata' from the BIFIEsurvey package
Version: 1.8
Category: NOTE * renamed 'fast.groupmean' and 'fast.groupsum' into
'GroupMean
Text: and 'GroupSum' and added function 'GroupSD' for calculation of
group-wise standard deviations
Version: 1.8
Category: NOTE * replace 'Hmisc::wtd.var' import by 'TAM::weighted_sd
Text:
Version: 1.8
Category: NOTE * shift Hmisc, inline, MBESS and pls packages from
Imports
Text: to Suggests and removed bayesm from Imports
Version: 1.8
Category: NOTE * rewrite of 'scan.vec' which avoids temporary file
savings
Text:
Version: 1.8
Category: NOTE * extended 'micombine.cor' to nested multiply imputed
datasets
Text: for objects of classes 'datlist' and 'nested.datlist' and single
datasets (optionally non-imputed), i.e. the input of
'micombine.cor' must not be mids objects
Version: 1.8
Category: NOTE * added function 'micombine.cov' which has same
functionality
Text: as 'micombine.cor'
Version: 1.8
Category: NOTE * added attributes in 'datlist' and 'nested.datlist' for
cases
Text: of varying sample sizes in imputed datasets
Version: 1.8
Category: FIXED * added functionality of handling single imputed
datasets in
Text: 'pool_mi' function
Version: 1.8
Category: ADDED * added inference for partial correlation in
'micombine.cor
Text: using the argument 'partial'
Version: 1.8
Category: FIXED * fixed an unnecessary warning message in
'datalist2mids' for
Text: class checking (thanks to Janet Kwok)
Version: 1.8
Category: ADDED * included imputation methode '2l.binary' of binary
variable
Text: with two-level logistic regression models
Version: 1.8
Category: DATA * included/modified datasets:
Text:
Version: 1.8
Category: EXAMP * included/modified examples: subset.datlist (1),
Text: ma.wtd.statsNA (1,2,3,4), GroupMean (1), mi.combine.cor (1,2)
Version: 1.7
Category: NOTE * allowed alternative specification of weighting
variable in
Text: 'scale_datlist' which now allows for group-wise standardizations
Version: 1.7
Category: NOTE * included arguments 'index' and 'systime' in
'save.data' for
Text: automatic inclusion of indices and time stamps in saved datasets
Version: 1.7
Category: NOTE * included argument 'se' in 'NMIcombine' function which
can be
Text: used if only standard errors instead of covariance matrices are
available
Version: 1.7
Category: ADDED * added utility function 'pool_mi' for inference of
multiply
Text: imputed datasets which has the same functionality as 'mice::pool'
or 'mitools::MIcombine'. This function provides summary, coef
and vcov S3 methods.
Version: 1.7
Category: NOTE * function 'datalist2mids' is now also accessible via
Text: 'datlist2mids' (which is more coherent to class 'datlist')
Version: 1.7
Category: NOTE * defined 'pool_nmi' synonymously to 'NMIcombine
Text:
Version: 1.7
Category: NOTE * added S3 print method for 'datlist', 'nested.datlist
Text: 'NestedImputationList'
Version: 1.7
Category: ADDED * added subsetting methods 'subset_datlist' (and the S3
method
Text: subset) for multiply imputed datasets and 'subset_nested.datlist'
for nested multiply imputed datasets
Version: 1.7
Category: NOTE * added further calculation of fraction of missing
information for
Text: nested multiply imputed datasets according to Harel and Schafer
(2002) in 'NMIcombine' which can be assessed by the argument
'method=2'.
Version: 1.7
Category: NOTE * extended imputation of latent group means to
lme4-based imputation
Text: in 'mice.impute.2l.latentgroupmean.ML' and MCMCglmm based
imputation in 'mice.impute.2l.latentgroupmean.MCMC'
Version: 1.7
Category: NOTE * added with and within methods for objects of class
'datlist
Text: and 'nested.datlist'
Version: 1.7
Category: ADDED * added convenience functions 'withPool_MI' and
'withPool_NMI' for
Text: pooling (averaging) estimates for (nested) multiply imputed
datasets
Version: 1.7
Category: ADDED * added utility function 'scan0' which is 'scan' with
default
Text: what='character'
Version: 1.7
Category: ADDED * added utility functions 'nestedList2List' and
'List2nestedList
Text: for list conversions
Version: 1.7
Category: ADDED * added functions 'nested.datlist2datlist' and
'datlist2nested.datlist
Text: for converting nested multiply and multiply imputed datasets
Version: 1.7
Category: NOTE * extended argument 'type' in 'save.data' for saving a
dataset in
Text: multiple file formats
Version: 1.7
Category: NOTE * added example for plausible value imputation in Amelia
package
Text: in draw.pv.ctt.Rd (Example 1)
Version: 1.7
Category: NOTE * added 'print' methods for 'mids.1chain' and 'mids.nmi'
objects
Text: (the method is equivalent to 'summary')
Version: 1.7
Category: NOTE * exported 'write.fwf2' and 'read.fwf2' for writing and
reading
Text: files in fixed width format
Version: 1.7
Category: NOTE * added utility function 'VariableNames2String' for
handling
Text: variable names which should be converted into strings
Version: 1.7
Category: ADDED * added utility function 'write.datlist' for writing
multiply
Text: imputed datasets
Version: 1.7
Category: ADDED * included function 'mi_dstat' for relating missingness
Text: indicators to covariates
Version: 1.7
Category: DATA * included/modified datasets:
Text:
Version: 1.7
Category: EXAMP * included/modified examples: scale_datlist (1),
save.data (1
Text: pool.mids.nmi (1,2), pool_mi (1), subset_datlist (1,2),
datlist2mids (1), with.miceadds (1,2), scan.vec (1),
nestedList2List (1), datlist_create (4), save.data (1),
draw.pv.ctt (1), write.fwf2 (1), data.graham (1,2),
VariableNames2String (1), write.datlist (1), mi_dstat (1)
Version: 1.6
Category: NOTE * included argument 'X' in 'mids2datlist' and
'mids2mlwin'
Text: which allows the inclusion of further variables in list of
multiply imputed datasets
Version: 1.6
Category: NOTE * output of function 'mids2datlist' is now of class
'datlist'
Text: or 'nested.datlist'
Version: 1.6
Category: ADDED * extended weighted statistics 'ma.wtd.statNA' to
(nested
Text: multiply imputed datasets
Version: 1.6
Category: NOTE * included 'datlist_create' and 'nested.datlist_create'
utility
Text: function
Version: 1.6
Category: NOTE * changed estimation method in imputation of latent
group means
Text: in 'mice.impute.2l.latentgroupmean' to MCMC estimation using the
MCMCglmm package
Version: 1.6
Category: ADDED * added 'scale_datlist' for adding a standardized
variable to a
Text: list of multiply imputed datasets
Version: 1.6
Category: NOTE * cleaned namespace file and defined imported functions
Text: in a more explicit way
Version: 1.6
Category: DATA * included/modified datasets:
Text:
Version: 1.6
Category: EXAMP * included/modified examples: mids2datlist (3),
Text: ma.wtd.statNA (1,2,3), datlist_create (1,2), scale_datlist (1,2),
cxxfunction.copy (1)
Version: 1.5
Category: NOTE * changed function 'save.data' due to changes in a
recent sjmisc
Text: package update on CRAN
Version: 1.5
Category: DATA * included/modified datasets:
Text:
Version: 1.5
Category: EXAMP * included/modified examples:
Text:
Version: 1.4
Category: NOTE * included argument 'suffix' in 'save.data' for easier
Text: inclusion of parts of file names when saving data
Version: 1.4
Category: FIXED * fixed a bug in imputation method '2l.latentgroupmean
Text: (reported by Simon Grund)
Version: 1.4
Category: ADDED * added Spearman rank correlation for 'micombine.cor'
and
Text: an example for statistical inference for Kendalls tau (see
'micombine.cor', Example 2) (suggested by Kathleen Gali)
Version: 1.4
Category: DATA * included/modified datasets:
Text:
Version: 1.4
Category: EXAMP * included/modified examples: micombine.cor (2
Text:
Version: 1.3
Category: ADDED * added imputation method 'grouped' for grouped
(coarsed) data
Text:
Version: 1.3
Category: ADDED * included 'NMIcombine' function as an extension to
Text: 'MIcombine' (mitools package) to nested multiply imputed datasets
Version: 1.3
Category: ADDED * included function 'NMIwaldtest' which performs a
multi
Text: parameter Wald test for nested multiply imputed datasets
Version: 1.3
Category: NOTE * added argument 'extend' in 'fast.groupmean' which is
useful
Text: for the inclusion of group means in original datasets
Version: 1.3
Category: ADDED * added D1 statistic (Wald test) 'MIwaldtest' as a
Text: multiparameter test for multiply imputed datasets
Version: 1.3
Category: FIXED * fixed a bug in 'lm.cluster' and 'glm.cluster'.
Text:
Version: 1.3
Category: NOTE * The 'cluster' argument in 'lm.cluster' now allows
vector input
Text:
Version: 1.3
Category: NOTE * included datasets from missing data book of Graham
(data.graham)
Text:
Version: 1.3
Category: NOTE * included some examples of the jomo package
Text:
Version: 1.3
Category: NOTE * added argument 'NMI' in 'NMIcombine' function which
now also
Text: allows input for non-nested multiple imputation
Version: 1.3
Category: ADDED * added 'NMIextract' function as an extension of
'MIextract
Text: (mitools package) to nested multiply imputed datasets
Version: 1.3
Category: NOTE * added utility function 'library_install' which loads
packages
Text: and conducts installations if required
Version: 1.3
Category: DATA * included/modified datasets: data.ma06, data.graham
Text:
Version: 1.3
Category: EXAMP * included/modified examples: mice.impute.grouped (1
Text: pool.mids.nmi (1.4,1.5), NMIwaldtest (1,2), fast.groupmean (1),
lm.cluster (1,2), jomo2datlist (1), pool.mids.nmi (1),
library_install (1)
Version: 1.2
Category: NOTE * fixed a bug in 'load.data' for loading datasets of
type 'table
Text:
Version: 1.2
Category: ADDED * included utility function 'mids2mlwin' for writing
MLwiN files
Text: (contributed by Thorsten Luka)
Version: 1.2
Category: NOTE * added suggestions to sav file writing functions in
haven and
Text: sjmisc packages
Version: 1.2
Category: NOTE * removed dependency on PSPP for writing sav files in
'save.data
Text: Now, the function 'write_spss' from the sjmisc package is used.
Version: 1.2
Category: NOTE * added further values in 'systime' function
Text:
Version: 1.2
Category: ADDED * added a utility function 'visitSequence.determine'
for
Text: determining visit sequence for an imputation model when passive
variables are involved
Version: 1.2
Category: ADDED * added function 'mice.nmi' for conducting nested
multiple
Text: imputation generating objects of class 'mids.nmi'
Version: 1.2
Category: ADDED * extended 'complete' function from mice package for
objects of
Text: classes 'mids.1chain' (function 'complete.mids.1chain') and
'mids.nmi' (function 'complete.mids.nmi')
Version: 1.2
Category: ADDED * extended 'mids2datlist' for objects of class
'mids.nmi
Text:
Version: 1.2
Category: ADDED * added 'with' S3 method for objects of class
'mids.1chain' and
Text: 'mids.nmi' producing objects of class 'mira' (defined in mice)
and 'mira.nmi'. For 'mira.nmi', a summary method is defined.
Version: 1.2
Category: ADDED * added 'within' S3 methods for objects of class
'imputationList
Text: (which are defined in the mitools package)
Version: 1.2
Category: ADDED * added statistical inference for nested multiply
imputed datasets
Text: in 'pool.mids.nmi' function
Version: 1.2
Category: ADDED * added functions 'lm.cluster' and 'glm.cluster' for
cluster robust
Text: standard errors for 'lm' and 'glm' functions using the
multiwaycov package (and the function 'cluster.vcov' therein)
Version: 1.2
Category: ADDED * added function 'NestedImputationList' function for
creating objects
Text: of class 'NestedImputationList'. S3 Methods 'with' and 'within'
are defined for operating on this list of lists of datasets.
The S3 method 'MIcombine' (from mitools package) is extended to
objects of class 'Nested ImputationResultList'.
Version: 1.2
Category: DATA * included/modified datasets:
Text:
Version: 1.2
Category: EXAMP * included/modified examples: write.pspp (1), save.data
(1
Text: systime (1), visitSequence.determine (1), datalist2mids (1),
mice.nmi (1), complete.miceadds (1,2), mids2datlist (2),
with.miceadds (1,2), pool.mids.nmi (1), lm.cluster (1),
NestedImputationList (1)
Version: 1.1
Category: NOTE * extended 'datalist2mids' function to handle a single
dataset
Text:
Version: 1.1
Category: ADDED * included plausible value imputation via a provided
Text: individual likelihood
Version: 1.1
Category: NOTE * included row.names argument and missing value argumant
Text: in 'save.data'
Version: 1.1
Category: DATA * included/modified datasets:
Text:
Version: 1.1
Category: EXAMP * included/modified examples:
mice.impute.2l.plausible.values (2
Text:
Version: 1.0
Date: 2014-11-08
Category: NOTE * fixed a minor bug in write.pspp when a variable only
Text: contains values of zero
Version: 1.0
Date: 2014-11-08
Category: NOTE * allow specification of a part of the file name in
'load.data
Text: the most recent file is loaded
Version: 1.0
Date: 2014-11-08
Category: DATA * included/modified datasets:
Text:
Version: 1.0
Date: 2014-11-08
Category: EXAMP * included/modified examples:
Text:
Version: 0.14
Category: ADDED * included Type 3 sum of squares in ANOVA in 'mi.anova
Text: (thanks to Florian Buchwald)
Version: 0.14
Category: ADDED * included a function 'load.Rdata2' which prevents from
Text: the definition of the output in the global environment as in
'load.Rdata'
Version: 0.14
Category: ADDED * included utility function 'load.data' and 'save.data
Text: for loading and saving data files from and to several formats
Version: 0.14
Category: DATA * included/modified datasets:
Text:
Version: 0.14
Category: EXAMP * included/modified examples: mi.anova (1), load.Rdata
Text: load.data, save.data
Version: 0.13
Category: ADDED * included several R utility functions
Text:
Version: 0.13
Category: DATA * included/modified datasets:
Text:
Version: 0.13
Category: EXAMP * included/modified examples:
Text:
Version: 0.12
Category: FIXED * included bug fixes for 'mice.impute.2lonly.pmm' (mice
version
Text: 2.21) as 'mice.impute.2lonly.pmm2' in miceadds -> the same for
'mice.impute.2lonly.norm'
Version: 0.12
Category: DATA * included/modified datasets:
Text:
Version: 0.12
Category: EXAMP * included/modified examples:
Text:
Version: 0.11
Category: FIXED * fixed a bug in tw.mcmc.imputation for rows with only
missings
Text:
Version: 0.11
Category: ADDED * included function write.pspp for writing SPSS files
using PSPP
Text:
Version: 0.11
Category: ADDED * included predict method for kernelpls.fit2 function
Text:
Version: 0.11
Category: NOTE * export and extended fast.groupmean function to include
weights
Text:
Version: 0.11
Category: NOTE * export mice.impute.2l.pls and mice.impute.2l.pls2
Text:
Version: 0.11
Category: FIXED * fixed a bug in the creation of interactions in
Text: mice.impute.2l.pls (thanks to Takuya Yanagida)
Version: 0.11
Category: NOTE * included calculation of weighted covariance matrix
with missing
Text: entries in datasets
Version: 0.11
Category: ADDED * included mice.impute.pmm3, mice.impute.pmm4,
mice.impute.pmm5 and
Text: mice.impute.pmm6
Version: 0.11
Category: NOTE * included scale2 as a faster substitute for the scale
function in R
Text:
Version: 0.11
Category: ADDED * included mice.1chain as an alternative to the mice
function
Text: which multiply imputes data from a long chain
Version: 0.11
Category: ADDED * included imputation function 'mice.impute.2l.eap' for
imputation
Text: from a known (normal) posterior distribution
Version: 0.11
Category: ADDED * included function mids2datlist for conversion of a
mids object
Text: into a list of datasets
Version: 0.11
Category: NOTE * included datasets: all datasets contained in the
package
Text:
Version: 0.11
Category: NOTE * included examples: for all functions
Text: #### older miceadds versions (formerly micetrun)
Version: 0.10
Text:
Version: 0.8
Text:
Version: 0.7
Text:
Version: 0.6
Text:
Version: 0.5
Text:
Version: 0.4
Text:
Version: 0.3
Text:
Version: 0.2
Text:
Version: 0.1
Text: